A Compost Treatment Acts as a Suppressive Agent in Phytophthora capsici - Cucurbita pepo Pathosystem by Modifying the Rhizosphere Microbiota.
Identifieur interne : 000327 ( Main/Exploration ); précédent : 000326; suivant : 000328A Compost Treatment Acts as a Suppressive Agent in Phytophthora capsici - Cucurbita pepo Pathosystem by Modifying the Rhizosphere Microbiota.
Auteurs : Alessio Bellini [Italie] ; Ilario Ferrocino [Italie] ; Maria Alexandra Cucu [Italie] ; Massimo Pugliese [Italie] ; Angelo Garibaldi [Italie] ; Maria Lodovica Gullino [Italie]Source :
- Frontiers in plant science [ 1664-462X ] ; 2020.
Abstract
Phytophthora capsici Leonian (PHC) is a filamentous pathogen oomycete that causes root, fruit, foliar and crown rot over a wide host range, including the economically and nutritionally important summer squash (Cucurbita pepo var. cylindrica L.) crop. PHC chemical control strategies are difficult to adopt, due to the limited number of registered chemicals that are permitted and the scalar harvest system. For these reasons, other strategies, such as the use of waste-based composts that can act as suppressive agents against several soilborne pathogens, have been studied intensively. It is well known that compost's microbiota plays an important role to confer its suppressive ability. In this study, four different composts were analyzed with both 16S rRNA gene and 18S rRNA gene real-time PCR amplification and with 26S gene amplicon-based sequencing; the total abundance of the bacterial and fungal communities was found to be higher compared to literature, thus confirming that the four composts were a good inoculum source for agricultural applications. The core mycobiota was mainly composed of 31 genera; nevertheless, it was possible to observe a clear predominance of the same few taxa in all the composts. The four composts were then tested, at different concentrations (1-10-20% v/v), to establish their ability to confer suppressiveness to the Phytophthora capsici (PHC) - Cucurbita pepo pathosystem in controlled greenhouse pot trials. A total of 12 compost mixtures were considered, and of these, one (Trichoderma-enriched compost at 10% v/v) was able to statistically reduce the disease incidence caused by PHC (by 50% compared to the untreated control). Hence, the microbiota composition of the most effective compost treatment was investigated and compared with untreated and chemical (metalaxyl) controls. Mycobiota sequencing showed genera differences between the three treatments, with relative abundances of several fungal genera that were significantly different among the samples. Moreover, PCA analyses clustered the compost treatment differently from the chemical and the untreated controls. These findings suggest that suppressive activity of a compost is strictly influenced by its microbiota and the applied dosage, but the ability to induce a shaping in the rhizosphere microbial composition is also required.
DOI: 10.3389/fpls.2020.00885
PubMed: 32670324
PubMed Central: PMC7327441
Affiliations:
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Cucurbita pepo</i> Pathosystem by Modifying the Rhizosphere Microbiota.</title><author><name sortKey="Bellini, Alessio" sort="Bellini, Alessio" uniqKey="Bellini A" first="Alessio" last="Bellini">Alessio Bellini</name><affiliation wicri:level="3"><nlm:affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author><author><name sortKey="Ferrocino, Ilario" sort="Ferrocino, Ilario" uniqKey="Ferrocino I" first="Ilario" last="Ferrocino">Ilario Ferrocino</name><affiliation wicri:level="3"><nlm:affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author><author><name sortKey="Cucu, Maria Alexandra" sort="Cucu, Maria Alexandra" uniqKey="Cucu M" first="Maria Alexandra" last="Cucu">Maria Alexandra Cucu</name><affiliation wicri:level="3"><nlm:affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author><author><name sortKey="Pugliese, Massimo" sort="Pugliese, Massimo" uniqKey="Pugliese M" first="Massimo" last="Pugliese">Massimo Pugliese</name><affiliation wicri:level="3"><nlm:affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>AgriNewTech s.r.l., Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AgriNewTech s.r.l., Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author><author><name sortKey="Garibaldi, Angelo" sort="Garibaldi, Angelo" uniqKey="Garibaldi A" first="Angelo" last="Garibaldi">Angelo Garibaldi</name><affiliation wicri:level="3"><nlm:affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author><author><name sortKey="Gullino, Maria Lodovica" sort="Gullino, Maria Lodovica" uniqKey="Gullino M" first="Maria Lodovica" last="Gullino">Maria Lodovica Gullino</name><affiliation wicri:level="3"><nlm:affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin</wicri:regionArea><placeName><settlement type="city">Turin</settlement><region type="région" nuts="2">Piémont</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Phytophthora capsici</i> Leonian (PHC) is a filamentous pathogen oomycete that causes root, fruit, foliar and crown rot over a wide host range, including the economically and nutritionally important summer squash (<i>Cucurbita pepo</i> var. <i>cylindrica</i> L.) crop. PHC chemical control strategies are difficult to adopt, due to the limited number of registered chemicals that are permitted and the scalar harvest system. For these reasons, other strategies, such as the use of waste-based composts that can act as suppressive agents against several soilborne pathogens, have been studied intensively. It is well known that compost's microbiota plays an important role to confer its suppressive ability. In this study, four different composts were analyzed with both 16S rRNA gene and 18S rRNA gene real-time PCR amplification and with 26S gene amplicon-based sequencing; the total abundance of the bacterial and fungal communities was found to be higher compared to literature, thus confirming that the four composts were a good inoculum source for agricultural applications. The core mycobiota was mainly composed of 31 genera; nevertheless, it was possible to observe a clear predominance of the same few taxa in all the composts. The four composts were then tested, at different concentrations (1-10-20% v/v), to establish their ability to confer suppressiveness to the <i>Phytophthora capsici</i> (PHC) - <i>Cucurbita pepo</i> pathosystem in controlled greenhouse pot trials. A total of 12 compost mixtures were considered, and of these, one (<i>Trichoderma</i>-enriched compost at 10% v/v) was able to statistically reduce the disease incidence caused by PHC (by 50% compared to the untreated control). Hence, the microbiota composition of the most effective compost treatment was investigated and compared with untreated and chemical (metalaxyl) controls. Mycobiota sequencing showed genera differences between the three treatments, with relative abundances of several fungal genera that were significantly different among the samples. Moreover, PCA analyses clustered the compost treatment differently from the chemical and the untreated controls. These findings suggest that suppressive activity of a compost is strictly influenced by its microbiota and the applied dosage, but the ability to induce a shaping in the rhizosphere microbial composition is also required.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32670324</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>A Compost Treatment Acts as a Suppressive Agent in <i>Phytophthora capsici - Cucurbita pepo</i> Pathosystem by Modifying the Rhizosphere Microbiota.</ArticleTitle><Pagination><MedlinePgn>885</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2020.00885</ELocationID><Abstract><AbstractText><i>Phytophthora capsici</i> Leonian (PHC) is a filamentous pathogen oomycete that causes root, fruit, foliar and crown rot over a wide host range, including the economically and nutritionally important summer squash (<i>Cucurbita pepo</i> var. <i>cylindrica</i> L.) crop. PHC chemical control strategies are difficult to adopt, due to the limited number of registered chemicals that are permitted and the scalar harvest system. For these reasons, other strategies, such as the use of waste-based composts that can act as suppressive agents against several soilborne pathogens, have been studied intensively. It is well known that compost's microbiota plays an important role to confer its suppressive ability. In this study, four different composts were analyzed with both 16S rRNA gene and 18S rRNA gene real-time PCR amplification and with 26S gene amplicon-based sequencing; the total abundance of the bacterial and fungal communities was found to be higher compared to literature, thus confirming that the four composts were a good inoculum source for agricultural applications. The core mycobiota was mainly composed of 31 genera; nevertheless, it was possible to observe a clear predominance of the same few taxa in all the composts. The four composts were then tested, at different concentrations (1-10-20% v/v), to establish their ability to confer suppressiveness to the <i>Phytophthora capsici</i> (PHC) - <i>Cucurbita pepo</i> pathosystem in controlled greenhouse pot trials. A total of 12 compost mixtures were considered, and of these, one (<i>Trichoderma</i>-enriched compost at 10% v/v) was able to statistically reduce the disease incidence caused by PHC (by 50% compared to the untreated control). Hence, the microbiota composition of the most effective compost treatment was investigated and compared with untreated and chemical (metalaxyl) controls. Mycobiota sequencing showed genera differences between the three treatments, with relative abundances of several fungal genera that were significantly different among the samples. Moreover, PCA analyses clustered the compost treatment differently from the chemical and the untreated controls. These findings suggest that suppressive activity of a compost is strictly influenced by its microbiota and the applied dosage, but the ability to induce a shaping in the rhizosphere microbial composition is also required.</AbstractText><CopyrightInformation>Copyright © 2020 Bellini, Ferrocino, Cucu, Pugliese, Garibaldi and Gullino.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bellini</LastName><ForeName>Alessio</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ferrocino</LastName><ForeName>Ilario</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cucu</LastName><ForeName>Maria Alexandra</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pugliese</LastName><ForeName>Massimo</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>AgriNewTech s.r.l., Turin, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Garibaldi</LastName><ForeName>Angelo</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gullino</LastName><ForeName>Maria Lodovica</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>AGROINNOVA - Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cucurbita pepo</Keyword><Keyword MajorTopicYN="N">Phytophthora capsici</Keyword><Keyword MajorTopicYN="N">Trichoderma</Keyword><Keyword MajorTopicYN="N">compost</Keyword><Keyword MajorTopicYN="N">mycobiota</Keyword><Keyword MajorTopicYN="N">soil metataxonomy</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>11</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>05</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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May;280:229-238</Citation><ArticleIdList><ArticleId IdType="pubmed">30772635</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Italie</li></country><region><li>Piémont</li></region><settlement><li>Turin</li></settlement></list><tree><country name="Italie"><region name="Piémont"><name sortKey="Bellini, Alessio" sort="Bellini, Alessio" uniqKey="Bellini A" first="Alessio" last="Bellini">Alessio Bellini</name></region><name sortKey="Bellini, Alessio" sort="Bellini, Alessio" uniqKey="Bellini A" first="Alessio" last="Bellini">Alessio Bellini</name><name sortKey="Cucu, Maria Alexandra" sort="Cucu, Maria Alexandra" uniqKey="Cucu M" first="Maria Alexandra" last="Cucu">Maria Alexandra Cucu</name><name sortKey="Ferrocino, Ilario" sort="Ferrocino, Ilario" uniqKey="Ferrocino I" first="Ilario" last="Ferrocino">Ilario Ferrocino</name><name sortKey="Garibaldi, Angelo" sort="Garibaldi, Angelo" uniqKey="Garibaldi A" first="Angelo" last="Garibaldi">Angelo Garibaldi</name><name sortKey="Gullino, Maria Lodovica" sort="Gullino, Maria Lodovica" uniqKey="Gullino M" first="Maria Lodovica" last="Gullino">Maria Lodovica Gullino</name><name sortKey="Gullino, Maria Lodovica" sort="Gullino, Maria Lodovica" uniqKey="Gullino M" first="Maria Lodovica" last="Gullino">Maria Lodovica Gullino</name><name sortKey="Pugliese, Massimo" sort="Pugliese, Massimo" uniqKey="Pugliese M" first="Massimo" last="Pugliese">Massimo Pugliese</name><name sortKey="Pugliese, Massimo" sort="Pugliese, Massimo" uniqKey="Pugliese M" first="Massimo" last="Pugliese">Massimo Pugliese</name><name sortKey="Pugliese, Massimo" sort="Pugliese, Massimo" uniqKey="Pugliese M" first="Massimo" last="Pugliese">Massimo Pugliese</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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